Entrez BrowserRetrieves molecular biology data and bibliographic citations from the NCBI`s integrated databases. http://www.ncbi.nlm.nih.gov/entrez |
BLASTNCBI`s sequence similarity search tool designed to support analysis of nucleotide and protein databases. http://www.ncbi.nlm.nih.gov/blast |
InterPro - The Integrated Resource ofA database built from Pfam, PRINTS and PROSITE. http://www.ebi.ac.uk/interpro |
ClustalWEBI server for multiple sequence alignment on the web http://www.ebi.ac.uk/clustalw |
PIR-International Protein Sequenceproduces a comprehensive, non-redundant, and expertly annotated protein sequence database. PIR features integrated annotation search to support functional/structural genomics and proteomic research. http://pir.georgetown.edu |
Munich Information Center for ProteinBioinformatics research group offering organism specific information (Yeast, Cress) as well as search tools for public databases. http://mips.gsf.de |
Center Structural Biology: Programs andUser guides and worked examples for software applications in structural and molecular biology - from Yale Univ. http://www.csb.yale.edu |
CUBIC: Columbia UniversityFeatures PredictProtein service for sequence analysis and protein structure prediction, META for single-page interface to validated sequence analysis, PredictNLS for prediction and analysis of nuclear localization signals, EVA for evaluation of automatic http://cubic.bioc.columbia.edu |
EMBL Bioinformatic HarvesterCollection of human (swall) proteins, crossreferences to major prediction servers. Supported predictions from: smart, string, blast, swall, mapview, sosui, ipsort and ncbi conserved domains. http://harvester.embl.de |
GenScan ServerIdentification of gene features such as exons and splice sites in genomic DNA. http://genes.mit.edu/genscan.html |
GeneStream IISequence comparision and search programs, including the rigorous Smith-Waterman algorithm (in FastA and Ssearch) - from the IGH, Montpellier FR. http://xylian.igh.cnrs.fr |
Microarray Database GatewayTools for managing, accessing, and analyzing cDNA microarray data generated by the NCI Div. of Clinical Sciences µArray Center - from the BioInformatics and Molecular Analysis Section of the NIH Center for Info. Technology. http://nciarray.nci.nih.gov |
ProteinLoungeBioinformatics portal which integrates protein information and many databases and research tools useful for researchers and students. Subscription based service. http://www.proteinlounge.com |
Biomolecular Interaction NetworkBIND is a database designed to store full descriptions of interactions, molecular complexes and pathways. http://bind.ca |
Database of Interacting Proteins (DIP)The DIP catalogs experimentally determined interactions between proteins while combining information from a variety of sources to create a single, consistent set of protein-protein interactions. http://dip.doe-mbi.ucla.edu |
Human Genome Sequencing CenterProvides direct access to the data computed on several organisms such as Rat, Mouse, Drosophila, and Bovine as it relates to human genome sequencing. http://www.hgsc.bcm.tmc.edu |
Searching GenBankText and similarity searching, provided by the National Center for Biotechnology Information (NCBI). http://www.ncbi.nlm.nih.gov/genbank/genbanksearch.html |
Proteomics ToolsOnline software for protein analysis from the Swiss Institute of Bioinformatics (SIB). http://www.expasy.ch/tools |
JpredSecondary protein structure prediction from amino acid sequence; based on a consensus from several methods including DSC, PHD, NNSSP, PREDATOR, ZPRED, and MULPRED. http://www.compbio.dundee.ac.uk/~www-jpred |
SWISS-PROT + TrEMBLThe SWISS-PROT database contains high-quality annotation, is non-redundant and cross-referenced to many other databases. SWISS-PROT is accompanied by TrEMBL, a computer-annotated supplement, which contains the translations of all coding sequences (CDS) http://www.ebi.ac.uk/swissprot |
BIOBASEThe focus of the GBF project "Molecular Bioinformatics of Gene Regulation" are regulatory genomic signals and regions that govern transcriptional control based on TRANSFAC - The Transcription Factor Database. It compiles data about gene regulatory DNA http://www.gene-regulation.com |